PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07336

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 314aa MW: 35151 Da PI: 8.4741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07336	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.4e-15	102	153	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A+e++k+L+ Ro05_G07336 102 QRMTHIAVERNRRKQMNEHLAILRSLMPES---YAQRGDQASIVGGAIEFVKELE 153 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MALEAISSNE SFNFIIYDTI SATPYSGQDS PAAAQTSFLL ENCGATTTPT MKAAAQDQYQ 60 RESCTTLGSR NRSLTSVTQQ QGRKKRKRKP RVCKNKEEAE TQRMTHIAVE RNRRKQMNEH 120 LAILRSLMPE SYAQRGDQAS IVGGAIEFVK ELEHLLLSLE AQKLQLIQSN IVNEDTSTTS 180 NSRVVQSVMS PFSQFLGYDI PQGHSWFHQQ SPNKYTSKTR ADIADIEVTL IETHANLRIL 240 TRRISPRQLS KLVAGIQTHQ LTILHLTVNT IYPFVLYSIS VKIEEGCLLT SVDDIAAAFH 300 HMLRVIEEAA AALC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	RKKRKR
2	83	89	RKKRKRK
3	84	89	KKRKRK
4	103	114	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-57	bHLH family protein