PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07236

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 377aa MW: 42765.5 Da PI: 9.527

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07236	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.4	7.6e-18	15	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e +aLi a+r+++ +lrr++lk+++W++v++ +++ qC++k+e+l+kry+++k++++ + s++++f+ ++ Ro05_G07236 15 CWTQDEAQALILAYRDRWYALRRTNLKAADWDDVAATTargcaVPSSPAKTALQCRHKMEKLRKRYRAEKQRASAYPGRFFSSWALFHLMD 105 8*********************************9966655445558999******************99999999****998 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MSTEQPKSRR VPPPCWTQDE AQALILAYRD RWYALRRTNL KAADWDDVAA TTARGCAVPS 60 SPAKTALQCR HKMEKLRKRY RAEKQRASAY PGRFFSSWAL FHLMDEIESD PDQKVHNGVQ 120 SGCGFPLKGR NLVNVKLFDK KFGNVDRNSS PDFGFNGNGG SEFDVETEVC QNSMARFKFK 180 ENSSFYSEVD DYFVQGVDDA SGFPLKTLGG RNTLPSGFRP KSNGKTVMNL KHNFKQDGDY 240 GIDIRSDRDF VPAGFWPKSS GIVDGDLKRK VNLKEFDGYS SLSRSKFVKK NGVVGVKREA 300 DPVEDLASSV TLLGERFVRV EKMKMEMTME IEKMRMEMEL KRNEVIIESQ QQIVDAFVNA 360 LLENKEKKKV KVESPDS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MSTEQPKSRR VPPPCWTQDE AQALILAYRD RWYALRRTNL KAADWDDVAA TTARGCAVPS  60
SPAKTALQCR HKMEKLRKRY RAEKQRASAY PGRFFSSWAL FHLMDEIESD PDQKVHNGVQ  120
SGCGFPLKGR NLVNVKLFDK KFGNVDRNSS PDFGFNGNGG SEFDVETEVC QNSMARFKFK  180
ENSSFYSEVD DYFVQGVDDA SGFPLKTLGG RNTLPSGFRP KSNGKTVMNL KHNFKQDGDY  240
GIDIRSDRDF VPAGFWPKSS GIVDGDLKRK VNLKEFDGYS SLSRSKFVKK NGVVGVKREA  300
DPVEDLASSV TLLGERFVRV EKMKMEMTME IEKMRMEMEL KRNEVIIESQ QQIVDAFVNA  360
LLENKEKKKV KVESPDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-29	Trihelix family protein