PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03498

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

E2F/DP

Protein Properties

Length: 379aa MW: 41817.5 Da PI: 9.6541

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03498	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.3	5.2e-23	31	96	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ ++ + v l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg Ro05_G03498 31 RKQKSLGLLCSNFIALYDREGVTSVGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYSWKG 96 79***************999********.....****************************98 PP
2	E2F_TDP	77	1.8e-24	166	246	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ + v+l+e+a+ L+ + +++k+RRiYDi+NVL+++nliek ++k++++w g Ro05_G03498 166 RREKSLALLTQNFVKLFVCSTVESVSLDEAARLLLGDahnasVMRTKVRRIYDIANVLSSMNLIEKthtadTRKPAYKWLG 246 689************************************999***********************9*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MASDAPPLQP PPPPPPPQPE VASTRHHAYS RKQKSLGLLC SNFIALYDRE GVTSVGLDDA 60 ASRLGVERRR IYDIVNVLES VGVLARKAKN QYSWKGFGAI PNALQELKEE GLKENFNTFH 120 GNFQGNDDPK GSDDEEGDES GPATGSQNDN AGVNPKSSSN SKNDNRREKS LALLTQNFVK 180 LFVCSTVESV SLDEAARLLL GDAHNASVMR TKVRRIYDIA NVLSSMNLIE KTHTADTRKP 240 AYKWLGLRGK DAASSASDES RKRAFGTDIT NVSCKRGKVE SSTGGKLEAR KQMQHESTVW 300 QRESMVRKVD RSNLEDSKEN SKSYQFGPFA PVTIARAGNI NMKKVDWDNL SSTYRPQYQN 360 PGAGGNSGRK ERERNWTGD

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MASDAPPLQP PPPPPPPQPE VASTRHHAYS RKQKSLGLLC SNFIALYDRE GVTSVGLDDA  60
ASRLGVERRR IYDIVNVLES VGVLARKAKN QYSWKGFGAI PNALQELKEE GLKENFNTFH  120
GNFQGNDDPK GSDDEEGDES GPATGSQNDN AGVNPKSSSN SKNDNRREKS LALLTQNFVK  180
LFVCSTVESV SLDEAARLLL GDAHNASVMR TKVRRIYDIA NVLSSMNLIE KTHTADTRKP  240
AYKWLGLRGK DAASSASDES RKRAFGTDIT NVSCKRGKVE SSTGGKLEAR KQMQHESTVW  300
QRESMVRKVD RSNLEDSKEN SKSYQFGPFA PVTIARAGNI NMKKVDWDNL SSTYRPQYQN  360
PGAGGNSGRK ERERNWTGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-119	E2F/DP family protein