PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03482
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 306aa    MW: 33143.8 Da    PI: 7.8111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03482genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1389133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
      Ro05_G03482  89 PWTEDEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 133
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MSATCSTVDP AGAKEFMLFG VRVVVDSMRK SVSLNNLSQY EQPPEASNNN NNSSSGTGKD  60
DAVAGYASEN DVVHNSGGNR ERERKRGVPW TEDEHKLFLL GLQKVGKGDW RGISRNYVKT  120
RTPTQVASHA QKYFLRRSNH NRRRRRSSLF DITTDSVPAI PMEEEQVHHQ DSTSHSSPLP  180
PPPPQSESCN PNGFSMVPIF SMTVGPAVVQ VPTENPTGNL TLGQGNPGSP SPMLVHPIAL  240
HSAPHATAIS DVNLNGAIDT SPLALNLSLS MNSRESSSRH SAFQAMSSFG NGDSIISIES  300
YPKIDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.23e-56MYB_related family protein