PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03445
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 307aa    MW: 33219.8 Da    PI: 7.6896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03445genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.7e-10656347
                     SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqky 47
                      W  eEd+ + +a++++  +       +W++Ia++++  +t +++k ++q++
      Ro05_G03445  6 VWNREEDKAFENAIALHWIDehedsneQWDKIASMVP-SKTMEELKQHYQML 56
                     6******************9*****************.************86 PP
2Myb_DNA-binding38.92e-12140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Ro05_G03445 140 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 184
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MSSASVWNRE EDKAFENAIA LHWIDEHEDS NEQWDKIASM VPSKTMEELK QHYQMLVEDV  60
RSIESGNTPI PNYGGEEATT SLSKDSSSTR ASSGASASDK RLNCGHGNGG GGFSALGHDS  120
SGHGSKGGSR SDQERKKGIP WTEEEHRLFL LGLDKFGKGD WRSISRNFVI SRTPTQVASH  180
AQKYFIRLNS MNRDRRRSSI HDITSVNNGG DVPSHQTPIT GQQSNAYAPS AAAIGPPSVK  240
HRAQPHMAGL GMYGAPMGHP VSAPPGHMAS AVGTPVMLPP GHHPHHAHPP PYVVPVAYPM  300
AHPTMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-73MYB family protein