PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03441
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 460aa    MW: 51745.1 Da    PI: 7.8479
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.7e-381733353134
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesss 79 
                   k+drhski+T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+qa ++ik+ t+                      ++ss          
  Ro05_G03441 173 CKRDRHSKISTARGLRDRRMRLSLDVARKFFGLQDVLGFDKASKTVEWLLNQACAEIKKVTRErsgqnqnqssstttatgpgarTTSSI--------- 261
                  69*************************************************************77766554444444444433322222......... PP

          TCP  80 ssasnsssg.........................kaaksaa..kskksqksaasalnlakesrakarararertrekmrikn 134
                          +                         ++++++   k  +++k+++s++   k sr++arararertre+m  ++
  Ro05_G03441 262 --------SecevvsgtdevatddiidkvsrnpsSSCTKDRikKIIRKPKKSSSFNPRTKASRERARARARERTRERMGRQS 335
                  ........1334444444444555667777778866666665344555555555666667******************8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MFPHSASSNI INTSTATGNY YESAVSFPHD QSFLIHSRPF PSDITPNLNP NPNPNSNSDS  60
IISNSKQYQD LEEDLNHHIH PPLSVFYFPS PFEDVDVLLH QHHHLHDHEP LALQETISLA  120
QNHHHHHHQT SFPLTAKMVD WDANKNDQVV INKEGEQQHQ QQKQIPMLRK RSCKRDRHSK  180
ISTARGLRDR RMRLSLDVAR KFFGLQDVLG FDKASKTVEW LLNQACAEIK KVTRERSGQN  240
QNQSSSTTTA TGPGARTTSS ISECEVVSGT DEVATDDIID KVSRNPSSSC TKDRIKKIIR  300
KPKKSSSFNP RTKASRERAR ARARERTRER MGRQSKPCDD VDQATKTKDL SRLNSWSTFE  360
TGEESGGTQS HNNNNNNNIH SSLEVLAEVE EPISSFQAAG TSSTTTDHHQ DLIAIDGHDA  420
AANMAIMGKW SPYPSIFNYL QNTTGSISQE INQKSVLHNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316326RERARARARER
2318328RERARARARER
3320330RERARARARER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-24TCP family protein