PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03350

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 379aa MW: 41867.6 Da PI: 8.9706

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03350	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.9	6.4e-29	60	185	3	101
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg.. 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+ + i++l+ + ++s+++++ ++ ++ Ro05_G03350 60 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVTEDDIDKLPPLqllphhgllnTTSTHHQF------LHQQ--QILnp 149 78*************************************************************555555554422222111......1111..11123 PP TCP 89 .......................kaaksaakskksq 101 k+ k++ ++++++ Ro05_G03350 150 lnvpffdvnqriseqvvldeskgKSIKANDHHQHDD 185 444455554444444444433322222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MITNSRGKSF QAKQEGQNNN NSDGNIMSSF NKAASSSTTT SRQWSGFRNP RIVRVSRTFG 60 GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTEDDIDKLP 120 PLQLLPHHGL LNTTSTHHQF LHQQQILNPL NVPFFDVNQR ISEQVVLDES KGKSIKANDH 180 HQHDDHDQQA LAQKLFPIGN MPSSIPGLLN NAMAYNNYFQ HHNSEPSSLS LSQFGSSHGF 240 PLVPQMDHMM SNNSGLSFST TSMPMAAGSQ LFLCPSTATP VPPLFGPYTP YITTTTPVVE 300 NSDDDQPALR QTNNHMIQLL SSSSSITSQN FGTNNGLMPS LQYSIGSSLR SFPTLVNPKL 360 HSQNNNGSSS QPNKDHTGS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MITNSRGKSF QAKQEGQNNN NSDGNIMSSF NKAASSSTTT SRQWSGFRNP RIVRVSRTFG  60
GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTEDDIDKLP  120
PLQLLPHHGL LNTTSTHHQF LHQQQILNPL NVPFFDVNQR ISEQVVLDES KGKSIKANDH  180
HQHDDHDQQA LAQKLFPIGN MPSSIPGLLN NAMAYNNYFQ HHNSEPSSLS LSQFGSSHGF  240
PLVPQMDHMM SNNSGLSFST TSMPMAAGSQ LFLCPSTATP VPPLFGPYTP YITTTTPVVE  300
NSDDDQPALR QTNNHMIQLL SSSSSITSQN FGTNNGLMPS LQYSIGSSLR SFPTLVNPKL  360
HSQNNNGSSS QPNKDHTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	7e-45	TCP family protein