PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03271

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 318aa MW: 35013.4 Da PI: 7.5339

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.4e-19	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l v+q+G g+W++ +++ g+ R++k+c++rw++yl Ro05_G03271 16 RGPWTPEEDKKLFAFVQQHGHGSWRSLPQKAGLQRCGKSCRLRWRNYL 63 89*********************************************7 PP
2	Myb_DNA-binding	49.8	7.8e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia+ + gRt++++k++w+++l Ro05_G03271 69 RGNFSLQEDQTIIQLHALLGNR-WSAIAANLA-GRTDNEIKNYWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MGKSSNCTVA TPGIKRGPWT PEEDKKLFAF VQQHGHGSWR SLPQKAGLQR CGKSCRLRWR 60 NYLRPDIKRG NFSLQEDQTI IQLHALLGNR WSAIAANLAG RTDNEIKNYW NTHLKKRLAK 120 IGFDPVTHKP KTAILASADG DPKNNSNLSH IAQWESARLQ AEARFVRESK LLKPAPPAPL 180 QCLDFNLRAW ETLLMSKSLL AAGGGGGGDD GGVGRATNIE QEVGSLGIFG DVHGNNGEQF 240 KAPTLTMSAA LDFNEALGEC GDNECGELLE ALLLQHSYNN TGFDVGNART LEQYNNINEN 300 DQDVIMNEGL TNTYMLWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-88	MYB family protein