PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03263

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 388aa MW: 43563.9 Da PI: 6.7368

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03263	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.7	6.1e-23	24	67	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tg+ Ro05_G03263 24 KLESSGNRQVTYSKRRNGILKKAKELSILCDVDITLLMFSPTGR 67 67999*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MHVQHYFANS QIAPMGRVKL KIKKLESSGN RQVTYSKRRN GILKKAKELS ILCDVDITLL 60 MFSPTGRPTL FQGERSNFED IIAKFAHLTP QERAKRKLES LEVLKKTFKK LDHDVNVQDF 120 VGSSTQTVED LTNHARALQT QLTELHKRLS VWSNPEKVDN LEQLRQMEDM LKESISQTRL 180 HKENFGKLQL ASLNCTGQFQ NGMPSPSIVN GVQEAQPIPW VLNNDNQHLI LPNEANFLPH 240 RDVDCSTNAS VARFTSYFGT GPSTSNSTGK QSEVGDPGQL DNMGQIPNME GGCGLNEYDI 300 NACLSTELGE QYAYPSYCSP NVPDDKKLKP GLEMNLPTNS VDYQASSNFE LPRSLYGDEH 360 HSWLSSSGPS SIAVYNENTY QQQPNMRL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MHVQHYFANS QIAPMGRVKL KIKKLESSGN RQVTYSKRRN GILKKAKELS ILCDVDITLL  60
MFSPTGRPTL FQGERSNFED IIAKFAHLTP QERAKRKLES LEVLKKTFKK LDHDVNVQDF  120
VGSSTQTVED LTNHARALQT QLTELHKRLS VWSNPEKVDN LEQLRQMEDM LKESISQTRL  180
HKENFGKLQL ASLNCTGQFQ NGMPSPSIVN GVQEAQPIPW VLNNDNQHLI LPNEANFLPH  240
RDVDCSTNAS VARFTSYFGT GPSTSNSTGK QSEVGDPGQL DNMGQIPNME GGCGLNEYDI  300
NACLSTELGE QYAYPSYCSP NVPDDKKLKP GLEMNLPTNS VDYQASSNFE LPRSLYGDEH  360
HSWLSSSGPS SIAVYNENTY QQQPNMRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-99	M-type_MADS family protein