PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03244

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 362aa MW: 40353.6 Da PI: 6.8265

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03244	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.2e-14	14	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ + R+ k+c++rw +yl Ro05_G03244 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTVdcfddqsgLMRCSKSCRLRWTNYL 69 79*************************9999*******************97 PP
2	Myb_DNA-binding	48.2	2.5e-15	75	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Ro05_G03244 75 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 120 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTVDCFDD QSGLMRCSKS 60 CRLRWTNYLR PGIKRGNFTD HEEKMIIHLQ ALLGNRWAAI ASYLPQRTDN DIKNYWNTHL 120 KKKLKKLQTG STAEDGFSGN SQQPISKGQW ERRLQTDIHM AKQALCEALS LDKPSHDHHH 180 VQDLKPSISN INGPTTTTTT RPHQASTYVS NTENIARLLE NWMKISPKAQ AISSDDHQRK 240 VHHQNMLHNG SSSSTTDGAH SATTTTPDNN DQHQGFDSLF SSFNSSTLSD NASQLSADNN 300 HQTSTTTNTT SLMMFQDESK PDLEAAAGSA AAAVDQVPLT LLEKWLFDDA TAHQAHDQDL 360 LF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTVDCFDD QSGLMRCSKS  60
CRLRWTNYLR PGIKRGNFTD HEEKMIIHLQ ALLGNRWAAI ASYLPQRTDN DIKNYWNTHL  120
KKKLKKLQTG STAEDGFSGN SQQPISKGQW ERRLQTDIHM AKQALCEALS LDKPSHDHHH  180
VQDLKPSISN INGPTTTTTT RPHQASTYVS NTENIARLLE NWMKISPKAQ AISSDDHQRK  240
VHHQNMLHNG SSSSTTDGAH SATTTTPDNN DQHQGFDSLF SSFNSSTLSD NASQLSADNN  300
HQTSTTTNTT SLMMFQDESK PDLEAAAGSA AAAVDQVPLT LLEKWLFDDA TAHQAHDQDL  360
LF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	6e-99	MYB family protein