PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03227

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 423aa MW: 45667.9 Da PI: 7.3545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03227	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.1	2.5e-41	95	218	2	91
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Ro05_G03227 95 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyysp 192 789*************************************************************9999988886667777766444445555556544 PP TCP 89 .......................kaa 91 ++ Ro05_G03227 193 nfsssiqhsqnqrrnlfqglglsSSD 218 44344444444433444444443222 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEGGDDHFHH HHHHYQQQQQ QQQQQQQHHH RPNFPFQLLD QKKEDEAASC SNNSAAASPY 60 PSLAISSAVD PTNPTASSNT AVTTVVAAEP SKKPPPKRTS TKDRHTKVDG RGRRIRMPAL 120 CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS 180 VPSQLRSSYY SPNFSSSIQH SQNQRRNLFQ GLGLSSSDSS STLLNFQTNT MHSMLQAKQE 240 LRDTVSLDLS EAASAAEGSM GRKRRPPEQD LNQMGSGYLL QSSAGAIPAS HHHSQMPANF 300 WMLANSNNQV MSGDPIWTFP SVNNSGLYRG TMSGGLHFMN FPTPVALLPS QQQLGGSGGG 360 DNGGNDGSGG DHHSNMSEGQ LNMLAGLNPY RPMSSESSQQ QASGSHSHHG GGDDRHDSTS 420 HHS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEGGDDHFHH HHHHYQQQQQ QQQQQQQHHH RPNFPFQLLD QKKEDEAASC SNNSAAASPY  60
PSLAISSAVD PTNPTASSNT AVTTVVAAEP SKKPPPKRTS TKDRHTKVDG RGRRIRMPAL  120
CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS  180
VPSQLRSSYY SPNFSSSIQH SQNQRRNLFQ GLGLSSSDSS STLLNFQTNT MHSMLQAKQE  240
LRDTVSLDLS EAASAAEGSM GRKRRPPEQD LNQMGSGYLL QSSAGAIPAS HHHSQMPANF  300
WMLANSNNQV MSGDPIWTFP SVNNSGLYRG TMSGGLHFMN FPTPVALLPS QQQLGGSGGG  360
DNGGNDGSGG DHHSNMSEGQ LNMLAGLNPY RPMSSESSQQ QASGSHSHHG GGDDRHDSTS  420
HHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-37	TCP family protein