PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01975
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 455aa    MW: 50546 Da    PI: 5.246
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01975genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.71.4e-115814541374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfsh 95 
                  lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ s k+   ++++  al+l +e++P ++f+h
  Ro05_G01975  81 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKFSAKDyalMDKKEEALRLVYEICPHIQFGH 178
                  689***************************************************9777666677888888777899999999**************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                  ++aN+ Ilea+ege+ vH++D++++    +G QW  L+q+La+R+++pp  +lRiTgvg      +++l+ +ge L+ +A++lg+++ef+  v+++le
  Ro05_G01975 179 FVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIQSLATRADQPPvsRLRITGVGL----CADRLQIIGEELEAYADSLGINLEFSC-VESNLE 271
                  *********************99873333667*************9999889********....***************************.79**** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                  +l++e++++ + E+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+
  Ro05_G01975 272 NLKPEDIKLFESEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKM 366
                  ***************************88877777...8*********************************************************** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+  +++  +++qak  l k k  +gy+v ee+g+lvlgWk+rp+v++S+W+
  Ro05_G01975 367 EQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQGSAIK--MMAQAKQWLGKNKiCEGYTVLEEKGCLVLGWKSRPIVAASCWK 454
                  ****************************************99985..799***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MALSRNFMPE QECSNHEIRT DRMSDLELLG LGHSAMACYS YPYMSSLEEG TEAVEEAAAA  60
MINAEENGAD KEDGTADGMR LVQLLIACAE AVACRDKSHA SALLSELRAN ALVFGSSFQR  120
VASCFVQGLA SRLALVQPLG AVGFVPSKFS AKDYALMDKK EEALRLVYEI CPHIQFGHFV  180
ANSSILEAFE GESFVHVVDL GMTLGLPHGD QWRGLIQSLA TRADQPPVSR LRITGVGLCA  240
DRLQIIGEEL EAYADSLGIN LEFSCVESNL ENLKPEDIKL FESEVLVVNS ILQLHCVVKE  300
SRGALNSVLQ MIHELSPKVL VLVEQDSSHN GPFFLGRFME ALHYYSAIFD SLDAMLPKYD  360
TRRAKMEQFY FAEEIKNIIS CEGPARVERH ERVDQWRRRM SRAGFQGSAI KMMAQAKQWL  420
GKNKICEGYT VLEEKGCLVL GWKSRPIVAA SCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-83GRAS family protein