PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01743

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 460aa MW: 51680.3 Da PI: 7.8675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01743	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	300	345	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L AveYI++L Ro05_G01743 300 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVEYINDL 345 699*********************6.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MDEIISSCSS PCIVCPETSP TSLQQRLQFT LQNRPESWVY SIFWKASNDG LSLSWAGGHF 60 RGIRDFSSKR SSIHKLNNNY QSKFGFDPKK GMINREIEAL FHDNMDLERF VDTNGDVTDS 120 EWFYFYTVSL TQTFAAGQKG NSNILGRAYS SGAFIWLAGD NDFQLYECDR VKEARMHEIR 180 TLVCVATSSG VLELASLDVI RQDWDFVQHA KSLFGISDST SEHESHGVHV HVPLPQNGLM 240 LSAAQKECTT HGRGMKELSF NIGGSSSDSG PSENIENIRS KKRGRSSSHV NGRRESPPIN 300 HVEAERQRRE KLNHRFYALR SVVPNVSKMD KASLLADAVE YINDLKTKVE ELEARIRGQT 360 NIAKVGSPSS IISYRVAAAM EVDVKFVGSD AMIRVQCRDN DDYPYARLMN ALKDLELQIY 420 HASISSVKEV MLQDIVARVP VGFTSAKAMR TAIVKRLNYQ

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MDEIISSCSS PCIVCPETSP TSLQQRLQFT LQNRPESWVY SIFWKASNDG LSLSWAGGHF  60
RGIRDFSSKR SSIHKLNNNY QSKFGFDPKK GMINREIEAL FHDNMDLERF VDTNGDVTDS  120
EWFYFYTVSL TQTFAAGQKG NSNILGRAYS SGAFIWLAGD NDFQLYECDR VKEARMHEIR  180
TLVCVATSSG VLELASLDVI RQDWDFVQHA KSLFGISDST SEHESHGVHV HVPLPQNGLM  240
LSAAQKECTT HGRGMKELSF NIGGSSSDSG PSENIENIRS KKRGRSSSHV NGRRESPPIN  300
HVEAERQRRE KLNHRFYALR SVVPNVSKMD KASLLADAVE YINDLKTKVE ELEARIRGQT  360
NIAKVGSPSS IISYRVAAAM EVDVKFVGSD AMIRVQCRDN DDYPYARLMN ALKDLELQIY  420
HASISSVKEV MLQDIVARVP VGFTSAKAMR TAIVKRLNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-55	bHLH family protein