PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36484
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 243aa    MW: 26628 Da    PI: 9.8576
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36484genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP78.61.7e-2444135188
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssasnsssg 88 
                  a+g kdrhsk++T++ +RdRRvRl a+  ++f+d+qd     ++sk+++WL+++ak+ai+el ++       ++s++  +  +a ++ ++as+  s 
  Ro04_G36484  44 ATGHKDRHSKVCTAKVLRDRRVRLAAHPTIQFYDVQD-----RPSKAVDWLIKKAKAAIDELEELppwnpsaQTSPPPVVpiSATQDTENASHRFSM 135
                  5789********************************7.....6**********************99777652222222233333333333322222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGESHNNHHR PTPLSATSRL SLGKRTSSST ASEIVEARGH ILRATGHKDR HSKVCTAKVL  60
RDRRVRLAAH PTIQFYDVQD RPSKAVDWLI KKAKAAIDEL EELPPWNPSA QTSPPPVVPI  120
SATQDTENAS HRFSMVEAPV SSPGNQRTAM VGSGVAELVN QNSSNFLPPS MDSDSIADTI  180
KSFFPMGAAT AAETMSFHHS YPPNLLSRTS SQSLDLRLSE MGKKEGESFE NFEMGKRVAR  240
VMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.23e-60TCP family protein