PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36355
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 288aa    MW: 31837 Da    PI: 4.9037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36355genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-1090131854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++RRdri++++  L+el+P++      K + a++L  A+eY+k L
  Ro04_G36355  90 LNKKRRDRIKEKMRILQELIPNC-----NKSDRASMLDDAIEYLKAL 131
                  569*******************8.....699**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MGNQVHGSEA STITTQACDF QYISPEDFTL LSDFVIPSPQ SQQQTSTCRN LVEDETCQEM  60
FEGLSNINHL ESILTPDNIF SDKKSFPSVL NKKRRDRIKE KMRILQELIP NCNKSDRASM  120
LDDAIEYLKA LKLQTQMKST GREAMWQAGI QSSSTQQIPQ FVPYIPMGFG MGMGMGMGMV  180
NMSGYSAAGG TGLPQFLSVP SSSTSTPSSL PLFSGPRFVP FPDQFQVPPS FMASQAMPTV  240
TTSFVQPQLI PRDFSNTFNP ANQGEPTSQY ITKTAMDHDN WKVPNPGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-19bHLH family protein