PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36266

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 445aa MW: 50729.5 Da PI: 9.9068

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36266	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.2	5.7e-18	12	97	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +Y+ + GF+vrk+k ++s +ng i+k ++Csk+g+r+ +kk + + + + tr+gCka++ +++++gk+++ +le Hn el Ro04_G36266 12 AYVKYGGKNGFNVRKQKRNRS-KNGLIVKLFYCCSKQGQRRINKKC--EPSYSVPITRVGCKAHMSCRLQNNGKFKIVSLERTHNQELI 97 59*************9999.7888************9998..89999******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEFSSYESAY KAYVKYGGKN GFNVRKQKRN RSKNGLIVKL FYCCSKQGQR RINKKCEPSY 60 SVPITRVGCK AHMSCRLQNN GKFKIVSLER THNQELIKTL MKHMLKINRC MSKAKKEHVD 120 DADMSGISVK VTVELMSREV EMLQHAEEVY TPKVFKLFQQ QYKRIGDYVA NKVSKSDMKY 180 EYLVSYRSIA REHLVKFDAS VQTIICSCMK FNFVGILCCH ALKVLDKKNV RKISSSYILN 240 RWSKEAKARS ITNYHAAKTS VNPEESIGKR YNHLCRNYLE IASVAADHEG LTKYAHEYSI 300 ELLKNLEEKK KTILKDNTCL NQTSEYHDVV LGEMPKACGV KRKATVGRPR GSGSGIKPIS 360 QAESYASTSP VRKASARKKI SFQLIFSHTI ASVTGDDSDL PLQVIGDNDP DLQLQDQFSF 420 TQMLQDVMIT RDEFSQSEGA KHLDL

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEFSSYESAY KAYVKYGGKN GFNVRKQKRN RSKNGLIVKL FYCCSKQGQR RINKKCEPSY  60
SVPITRVGCK AHMSCRLQNN GKFKIVSLER THNQELIKTL MKHMLKINRC MSKAKKEHVD  120
DADMSGISVK VTVELMSREV EMLQHAEEVY TPKVFKLFQQ QYKRIGDYVA NKVSKSDMKY  180
EYLVSYRSIA REHLVKFDAS VQTIICSCMK FNFVGILCCH ALKVLDKKNV RKISSSYILN  240
RWSKEAKARS ITNYHAAKTS VNPEESIGKR YNHLCRNYLE IASVAADHEG LTKYAHEYSI  300
ELLKNLEEKK KTILKDNTCL NQTSEYHDVV LGEMPKACGV KRKATVGRPR GSGSGIKPIS  360
QAESYASTSP VRKASARKKI SFQLIFSHTI ASVTGDDSDL PLQVIGDNDP DLQLQDQFSF  420
TQMLQDVMIT RDEFSQSEGA KHLDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	7e-15	FAR1 family protein