PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G26096
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 242aa    MW: 28021.1 Da    PI: 8.0366
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G26096genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.76.1e-2674162290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY++YA+++GF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++ra+tr gCka+++vk +k+gkw++tk+ ++HnH+l+
  Ro04_G26096  74 FYDDYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSGKWVITKFIKDHNHSLV 162
                  9**************************************99999998***************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MMGCVPASLL NFECLPENED KNKDRLLLES MDSDEGARAV ETSSKQELLA YEGEAILEPY  60
EGMEFESEDA AKIFYDDYAR RLGFVMRVMS CRRSERDGRI LARRLGCNKE GHCVSIRGKF  120
GPVRKPRAST REGCKAMIHV KYDKSGKWVI TKFIKDHNHS LVVSPREARQ TMDEKDKKIQ  180
ELSAELRNKK RLCTTYQEQL TAFMKIVDEY NDQLSRKVKK VVNNLKEFES IDVELTQLYK  240
ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-108FAR1 family protein