PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G26085

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 795aa MW: 87139 Da PI: 6.066

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G26085	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	500	538	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Ro04_G26085 500 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 538 589**********************************96 PP
2	TCR	50.6	3.9e-16	586	624	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN Ro04_G26085 586 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 624 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSIHFT QTFSSLSFAS LPSVFTSPHV 60 SSHKESRFLK RHNPSDLSKP EFSPESGNKV SVSEDAAQLY NNSSEIQEDG VPVVPIGEPS 120 VESPSEHSKF VIELPRNLNY DCGSPDCNPT SRCGIIKEDC DSELADFSAS LAPYVQETSD 180 KGSSDDEAHQ QGICQSAQRK EGTGCDWESL ISDAADILIF DSPNSTEAFK ELMQHSLDPM 240 TRFSSSIVPH LLQNNFSDEQ LVQVIDTVGS GQQLEIEDPS SQNGEASEMK ETEQRQNHLN 300 EYMIDNPTVK EDNNAETSMQ LTCKPVINLH RGLRRRCLDF EMTGTRRKSF DNVSNYSSSM 360 VSQSNEKVTT NDKQLVSMKP GGESSRCILP GIGLHLNALA TTSKDYKIIK NENLASGREL 420 NFPSSNASIH SPTAGQGTVY ESFPSASSER DMDGTESGVQ LLQDASQASA LLANEDLNQN 480 SPKKKRHVLR RTEHTGEGEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQDCFNKPIH 540 EDTVLATRKQ IESRNPLAFA PKVIRNSDSA APEYGDESSK TPASARHKRG CNCKKSNCLK 600 KYCECYQGGV GCSIGCRCEG CKNAFGTKEG SIIGTEAELD EEETEATEKS VADRDQPKNE 660 IQKNEEQTSA LPSTPLRLSR QLVPVSFSSK SKPPRSSVFS IGSSSGLYAS QKLGKPNILR 720 PQAKFVQRHN QTVPEDEMPE ILQGDCSPTT GVKTASPNSK RVSPPCTFGS SPGRRSGRKL 780 ILQSIPSFPS LTPQH

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSIHFT QTFSSLSFAS LPSVFTSPHV  60
SSHKESRFLK RHNPSDLSKP EFSPESGNKV SVSEDAAQLY NNSSEIQEDG VPVVPIGEPS  120
VESPSEHSKF VIELPRNLNY DCGSPDCNPT SRCGIIKEDC DSELADFSAS LAPYVQETSD  180
KGSSDDEAHQ QGICQSAQRK EGTGCDWESL ISDAADILIF DSPNSTEAFK ELMQHSLDPM  240
TRFSSSIVPH LLQNNFSDEQ LVQVIDTVGS GQQLEIEDPS SQNGEASEMK ETEQRQNHLN  300
EYMIDNPTVK EDNNAETSMQ LTCKPVINLH RGLRRRCLDF EMTGTRRKSF DNVSNYSSSM  360
VSQSNEKVTT NDKQLVSMKP GGESSRCILP GIGLHLNALA TTSKDYKIIK NENLASGREL  420
NFPSSNASIH SPTAGQGTVY ESFPSASSER DMDGTESGVQ LLQDASQASA LLANEDLNQN  480
SPKKKRHVLR RTEHTGEGEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQDCFNKPIH  540
EDTVLATRKQ IESRNPLAFA PKVIRNSDSA APEYGDESSK TPASARHKRG CNCKKSNCLK  600
KYCECYQGGV GCSIGCRCEG CKNAFGTKEG SIIGTEAELD EEETEATEKS VADRDQPKNE  660
IQKNEEQTSA LPSTPLRLSR QLVPVSFSSK SKPPRSSVFS IGSSSGLYAS QKLGKPNILR  720
PQAKFVQRHN QTVPEDEMPE ILQGDCSPTT GVKTASPNSK RVSPPCTFGS SPGRRSGRKL  780
ILQSIPSFPS LTPQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	483	510	KKKRHVLRRTEHTGEGEACKRCNCKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-167	CPP family protein