PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G25846

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 362aa MW: 40501.5 Da PI: 5.6958

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G25846	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++++G g+W++ ++ g+ R++k+c++rw +yl Ro04_G25846 14 RGRWTAEEDEILTNYIQLHGEGCWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	56.4	6.6e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+e +v++++ lG++ W++Ia++++ gRt++++k++w+++l Ro04_G25846 67 RGNITPDEEETIVKLHTALGNR-WSLIAAHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGCWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLRRGNI TPDEEETIVK LHTALGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIYTFT 120 KLVGNECLIP TIINNVSKVA APKSKRRGRT SRSTMKNKNK NGKIVTPFSQ EKLPESDVLE 180 SSIKENPNQV ETSNFMGLEC WAPKEKEAIR MLGVVKGCCL DTTEVMISST TTALCAANNE 240 ANEAFPCECV YSDAVDHNPS GSSNVVGFKE QREDGIMGFP DDHEVTIKSH EGVGISSNTE 300 SSGEMYSFSS PLNGAFDDSE WLNWDWVGGG LQCHNDDLEL WDEGEVRIPW LWESGNNVGD 360 KI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGCWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLRRGNI TPDEEETIVK LHTALGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIYTFT  120
KLVGNECLIP TIINNVSKVA APKSKRRGRT SRSTMKNKNK NGKIVTPFSQ EKLPESDVLE  180
SSIKENPNQV ETSNFMGLEC WAPKEKEAIR MLGVVKGCCL DTTEVMISST TTALCAANNE  240
ANEAFPCECV YSDAVDHNPS GSSNVVGFKE QREDGIMGFP DDHEVTIKSH EGVGISSNTE  300
SSGEMYSFSS PLNGAFDDSE WLNWDWVGGG LQCHNDDLEL WDEGEVRIPW LWESGNNVGD  360
KI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-77	MYB family protein