PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G21702
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 546aa    MW: 62257.4 Da    PI: 5.2
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G21702genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.5e-121522271187
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   +++ l++p     +++++ ++ +tl++ ++ +++W +k +++k  g++++t+GW +Fv++n++ ++  +vF  d+ 
  Ro04_G21702 152 KRTNYLCIPDGIGGHYKHDRRGYVTLSVDHKPNKTWAIKTNVDKD-GWVTFTSGWDRFVEENNVADNKWCVFNWDKY 227
                  5667899****9999999999*******************54444.57************************96654 PP
2B333.67.1e-113123811787
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  ++p     +++++ ++ +tl++ ++ +++W +k +++k  g++++t+GW +Fv++n++ ++  +vF  d+ 
  Ro04_G21702 312 CIPDGIGGHYKHDRRGYVTLSVDHKPNKTWAIKTNVDKD-GWVTFTSGWDRFVEENNVADNKWCVFNWDKY 381
                  677777777788888999****************54444.57************************96654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MFDHAGYLAM DANLDDQLPS FFIVVKKHGD NYDFMKIPQR FRMLHLQTDR TRVATLWLAG  60
VKSVSWKVEV GRDVSGVSLT AGWRSFVDNN IKGTHILLLM RYKGNMQFNI IRYGKRGDLM  120
YELPANASNK KGMSPGCAGL TNSFVTFVHP RKRTNYLCIP DGIGGHYKHD RRGYVTLSVD  180
HKPNKTWAIK TNVDKDGWVT FTSGWDRFVE ENNVADNKWC VFNWDKYPNH RVLQYHAFEG  240
SQYSGECEVD ELEGSYKEGD EDDNEDVADE DHNDTMIVEQ DGGQGVEVSL GDVDALPFST  300
WMCGVDQLLR YCIPDGIGGH YKHDRRGYVT LSVDHKPNKT WAIKTNVDKD GWVTFTSGWD  360
RFVEENNVAD NKWCVFNWDK YPNHRVLQYH AFEGSQYSGE CEVDELEGSY KEGDEDDNED  420
VADEDHNDTM IVEQDGGQGV EVSLGDVDAL PFSTCRIAKN TAVSNFVKVA AMLMQLGTEL  480
ARGHLVRYRK WWATLINGEG KQWQGLHKIQ KGKQSETSDK MQVYTGGREK AWFSNCVQEL  540
GMEWAV