PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G21698

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 963aa MW: 110150 Da PI: 7.8767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G21698	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.3	3.4e-15	119	230	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerr.....traetrtgCkaklkvkkek.dgk 75 k+Y Y++ vGFs+r+ k k r+g i++r++vCsk+g++ + kk ++k+r+ tr+ C a ++++ ++ +g+ Ro04_G21698 119 KMYAYYSHVVGFSTRRFKLDKD-REGLIVRREWVCSKQGQSPGQIKKktpksvkrsvneqtqfeKKKQRKfcvgrGIRYTRVFCPAAFTIRYSReRGE 215 58**************9998.7888*********9888777899*****998853334436665566789********999* PP FAR1 76 wevtkleleHnHela 90 ++v+k++++HnHela Ro04_G21698 216 YYVSKFVTHHNHELA 230 *************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MQLYMENDDV GLRYSDCAYY CSYSSDEDDS EDDSFVGVFE DCPEDTPMHD YIGSDRWTKA 60 GYTPSADPKR SPNREDQSKE DARSEDWCGY VRFNGKNIKK LCLKDFDGVG FTSVDDAEKM 120 YAYYSHVVGF STRRFKLDKD REGLIVRREW VCSKQGQSPG QIKKKTPKSV KRSVNEQTQF 180 EKKKQRKFCV GRGIRYTRVF CPAAFTIRYS RERGEYYVSK FVTHHNHELA TPEEVQFLRS 240 HRAVKEHDIA QVEALRGAQV HTSRAYEYLV HQAGGYQYVG FTMKDLYNNL EKRRRAQKLD 300 CDAQSVVTWM NMKGCVEKDF YCKFNSDGEG RLANMFWRDG QSLREYESFG DVLIVDSTYK 360 TNLYGKPLVV FVGANNHRAT VVFGFALTAD EKEETYTWVF ENFLASMNHK CPVAVLTDGD 420 EAVRNVVHNL MPEARHRLCA WHIGRNIGQN VKDAEAQKSL AKLIYASLTI PEWEEAWQCI 480 VARNGLENNL WVASLFNKRD RWAEAYFKGQ FFGGMCSTQR CEGMHSKLKK EIGRYTRLCE 540 VMPRMEKTIG RIRNRVLEDN FRSKNCVRVF DSHMKGMEEK AYQIFTDDIF VMIKSQINYE 600 TRFVISRRVA FANNDSVVFY VSQYDRPTRK WCVEYVVNEK NPKLNCSCKL FESDGIPCAH 660 IFCVLKVEMV TEYPKSLVMD RWTKAAGENT IPPKIAKNFP GKAAQVARYS ALIAECSKSC 720 FNSSFSDEGF NAAMEDFARL AEASKKYKDA HEENNPNVPE SNTNVLRDPV VAKTKGMHSN 780 TTTNNQPSRT EPNLCGKCGL PGHNRRTCKP ANQSVNSGVA DGSSQHSMQG EDAGVHKTAQ 840 VNSKTVNFLE HNDPPYFCQN TGHPTYGVFP PAQPTMLDHW NRPFSPNYFN PQSIDFEAPN 900 PETSIIRGDP SRHFGGVNDR EMDPLLGYAR GYDEVQAALL QYLMMLEVAV NIVLKGSSML 960 SLF

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MQLYMENDDV GLRYSDCAYY CSYSSDEDDS EDDSFVGVFE DCPEDTPMHD YIGSDRWTKA  60
GYTPSADPKR SPNREDQSKE DARSEDWCGY VRFNGKNIKK LCLKDFDGVG FTSVDDAEKM  120
YAYYSHVVGF STRRFKLDKD REGLIVRREW VCSKQGQSPG QIKKKTPKSV KRSVNEQTQF  180
EKKKQRKFCV GRGIRYTRVF CPAAFTIRYS RERGEYYVSK FVTHHNHELA TPEEVQFLRS  240
HRAVKEHDIA QVEALRGAQV HTSRAYEYLV HQAGGYQYVG FTMKDLYNNL EKRRRAQKLD  300
CDAQSVVTWM NMKGCVEKDF YCKFNSDGEG RLANMFWRDG QSLREYESFG DVLIVDSTYK  360
TNLYGKPLVV FVGANNHRAT VVFGFALTAD EKEETYTWVF ENFLASMNHK CPVAVLTDGD  420
EAVRNVVHNL MPEARHRLCA WHIGRNIGQN VKDAEAQKSL AKLIYASLTI PEWEEAWQCI  480
VARNGLENNL WVASLFNKRD RWAEAYFKGQ FFGGMCSTQR CEGMHSKLKK EIGRYTRLCE  540
VMPRMEKTIG RIRNRVLEDN FRSKNCVRVF DSHMKGMEEK AYQIFTDDIF VMIKSQINYE  600
TRFVISRRVA FANNDSVVFY VSQYDRPTRK WCVEYVVNEK NPKLNCSCKL FESDGIPCAH  660
IFCVLKVEMV TEYPKSLVMD RWTKAAGENT IPPKIAKNFP GKAAQVARYS ALIAECSKSC  720
FNSSFSDEGF NAAMEDFARL AEASKKYKDA HEENNPNVPE SNTNVLRDPV VAKTKGMHSN  780
TTTNNQPSRT EPNLCGKCGL PGHNRRTCKP ANQSVNSGVA DGSSQHSMQG EDAGVHKTAQ  840
VNSKTVNFLE HNDPPYFCQN TGHPTYGVFP PAQPTMLDHW NRPFSPNYFN PQSIDFEAPN  900
PETSIIRGDP SRHFGGVNDR EMDPLLGYAR GYDEVQAALL QYLMMLEVAV NIVLKGSSML  960
SLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-79	FAR1 family protein