PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G21080
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 306aa    MW: 34604 Da    PI: 5.0435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G21080genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-121257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ v++ G+++W++I ++  + Rt+k+c++rw +
      Ro04_G21080 12 KGPWKAEEDEVLLNHVNKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 57
                     79*************************8887799**********87 PP
2Myb_DNA-binding42.51.5e-1368107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
      Ro04_G21080  68 KFSLEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 107
                      799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEGKREEGII RKGPWKAEED EVLLNHVNKC GPRDWSSIRS KGLLQRTGKS CRLRWVNKLR  60
PNLKNGCKFS LEEERVVIEL QAQFGNKWAK IATYLPGRTD NDVKNFWSSR QKRLARILQT  120
STAITPSKLS HKNKREVPDY HDEVPTLEGL RKDIIPKLSC SSEGESSSQA ASPCIGNSNA  180
IKMVPFPDLE LLGFEANPIH HELALTEKND LWIESQPLIS FLENTQTDLE FSSNTQQHLR  240
DPYFDMFGPL DAELGNGEPP LLEPVGSFGN VEGEKIDNPI IPNCVFDDFP ADMFDHIEPL  300
PNLSDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-75MYB family protein