PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G19000
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 356aa    MW: 41423 Da    PI: 5.8655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G19000genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1131.9e-35271172101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws+++n+fvv+d + f+ ++LpkyFkh+nf+SFvRQLn+YgFkkv++++         weF+h+ F +g+k+ll++i+
   Ro04_G19000  27 FLNKTYEMVDDSTTNHIVSWSRENNTFVVWDLQYFSISLLPKYFKHNNFSSFVRQLNTYGFKKVDTDK---------WEFAHEGFLRGQKHLLKNIR 114
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   rk+
   Ro04_G19000 115 RKR 117
                   *97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MNPQGQVKEA PLPVPMERLK DRGPPPFLNK TYEMVDDSTT NHIVSWSREN NTFVVWDLQY  60
FSISLLPKYF KHNNFSSFVR QLNTYGFKKV DTDKWEFAHE GFLRGQKHLL KNIRRKRTFH  120
NIPHASQQAL DSCIEVGSFG SLDGEIDELR RDKEVLTGEL VKLAEQLQTA RAHLHGMEDK  180
FKRSEMKQQQ MMNFLARAMQ SPNFVQQLVQ VKDRKKQVEE AITKKRRRSI AGPSRVEGGE  240
LGQGESFVKV EPQQYGDISE LDVSELDMFV MDMLETDENR KVHGGKECMD KEEEHESRGK  300
DLWEGFWKEF LNDVVDKEIE VLDVQEEDEE AVNVLIEQIG CLVSRPKFFV LISVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214228RKKQVEEAITKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109HSF family protein