PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G18302

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 482aa MW: 53656.2 Da PI: 5.9813

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G18302	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	8.1e-35	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F +++k+ll++i+ Ro04_G18302 16 FLLKTYDMVDDSATDEIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFIQDQKHLLKNIH 103 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Ro04_G18302 104 RRK 106 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MDGSAAAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 LERAALDDEI EKLSHEKAAL EANISRFQQQ RSAEKLQLED LTQRVNGMEH RQKNLLTFLD 180 KAVQNPAFVE HLARKIESMD FSAYNKKRRL PDVDHLQSAV ENSFVDNQSS SRSEFGNIFH 240 QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGDSSTRKIS EELKGAQMRT EGLIFANEPL 300 ELSDTGTSFA FKMDTSPRKA PSVGSPGFHS LQSGLPSNED SDGNISCHLN LTLSSSPLKV 360 NNSPHSVTVP QVGQDISNSP ASGLNANDKE SDMRAFPNKS LADVDRPKTS PKEATNHNKG 420 HAPVPVRVND VFWEQFLTER PGCSGNEEAS SNYRENPYDE QDDGRAGHGM PRNAKGAETL 480 TL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MDGSAAAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
LERAALDDEI EKLSHEKAAL EANISRFQQQ RSAEKLQLED LTQRVNGMEH RQKNLLTFLD  180
KAVQNPAFVE HLARKIESMD FSAYNKKRRL PDVDHLQSAV ENSFVDNQSS SRSEFGNIFH  240
QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGDSSTRKIS EELKGAQMRT EGLIFANEPL  300
ELSDTGTSFA FKMDTSPRKA PSVGSPGFHS LQSGLPSNED SDGNISCHLN LTLSSSPLKV  360
NNSPHSVTVP QVGQDISNSP ASGLNANDKE SDMRAFPNKS LADVDRPKTS PKEATNHNKG  420
HAPVPVRVND VFWEQFLTER PGCSGNEEAS SNYRENPYDE QDDGRAGHGM PRNAKGAETL  480
TL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-164	HSF family protein