PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G17955

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 285aa MW: 30158.4 Da PI: 9.8083

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G17955	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.5	1.2e-38	52	144	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++ss +++ +++ Ro04_G17955 52 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGASSGAASLSNSS 144 78**************************************************************99999776.444444444333332111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MSSSEAPNNE LTNGVGMMIE PSSSQRQQQQ QQQQQQQQQN QLTTTSGNGV LAVKKPPSKD 60 RHSKVDGRGR RIRMPIICAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA 120 SFSTVSVSLR GGASSGAASL SNSSTTSSEH KPLLGGPTPF ILGKRMRADD DGKDGEAHHG 180 NNDGGAVSVV GHHSMSSMLA PAAAAQGGFW APHFGQVWSF AATPPPEMLT QQQSVSQQHS 240 LFLQQQPMGE ASAARVGNYL PGHLNLLASL SGGHGNSGRR EDDPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-69	TCP family protein