PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G17930

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 25974.4 Da PI: 9.4914

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G17930	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	91	146	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk+ ++t+eq++ Le+ F+++++++ ++++ LA l+L+ rqV vWFqNrRa+ k Ro04_G17930 91 KRKKLRLTTEQTTLLEDSFKRHSTLNPTQKQSLAGLLNLKPRQVEVWFQNRRARTK 146 799999************************************************98 PP
2	HD-ZIP_I/II	116.3	1.7e-37	92	180	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq +lLE+sF+++++L+p++K++la L+l+prqv+vWFqnrRARtk+kq+E+++e+Lk+++++l+++n++L+ke +eL++ Ro04_G17930 92 RKKLRLTTEQTTLLEDSFKRHSTLNPTQKQSLAGLLNLKPRQVEVWFQNRRARTKLKQTEVNCEFLKKWCESLSDQNRKLKKELQELKS 180 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MGDDDDHEAC NTRLQLGLGL GGYAPTHEMG NKDKPLDLSF ELRPKAEKIA NMDDRMAKGS 60 SLKTNIFDED EEDRRSTDRT NSEIMNRKNG KRKKLRLTTE QTTLLEDSFK RHSTLNPTQK 120 QSLAGLLNLK PRQVEVWFQN RRARTKLKQT EVNCEFLKKW CESLSDQNRK LKKELQELKS 180 LSVNGESSPL LNHQIPKTTM LTMCPSCERK VKAHDQYLNN EAAAKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-35	HD-ZIP family protein