PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G16582
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 306aa    MW: 34248.9 Da    PI: 9.8913
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G16582genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.92e-551272301101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Ro04_G16582 127 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 224
                  89****988888************************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr++l
  Ro04_G16582 225 VPREDL 230
                  ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
GQNRQRGKVK RKVIVGTTNQ NWRFFIVGRV RGLDRGCVKP RIGDKAERQK QGHGHPTTMG  60
VPGSAAQASY GVNPYQPSQM MGISPTGSVG MMQSPTQPGG PSAPSQLAQH QAYQHIHQQQ  120
QQQLQQQLQN FWSGQYQEIE QANDFKNHSL PLARIKKIMK ADEDVRMISA EAPVIFARAC  180
EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASIPR  240
GGNVPVVGPA DGLPYYYMPA QHPPQVGAPG MMVGKPVMDQ NMYGQPTHPY MAQPAWPQQQ  300
QPHKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-78NF-YC family protein