PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G16391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28251.4 Da PI: 5.5565 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd+ l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl Ro04_G16391 5 KGPWTTEEDQVLISYIQNYGHGNWRALPKHAGLLRCGKSCRLRWINYL 52 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 58 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Ro04_G16391 58 RGNFTREEEDAIINLHEMLGNRltcmhIWSAIAARLP-GRTDNEIKNVWHTHL 109 89***********************************.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MGLKKGPWTT EEDQVLISYI QNYGHGNWRA LPKHAGLLRC GKSCRLRWIN YLRPDIKRGN 60 FTREEEDAII NLHEMLGNRL TCMHIWSAIA ARLPGRTDNE IKNVWHTHLK KRLLKNNKTT 120 SPTCSTSNLT NQSADPEYSN KANINHHNQV NSSDDVSSVD NASATTGQDM IKDEKIEFNA 180 PFPEIDDSFW SEALSADNSG DIPLEFLEGT NDNSTHPQFP VTSNIDDGMN FWYDLFIRAG 240 DCGTPELPGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 6e-65 | MYB family protein |