PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G15389

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 525aa MW: 56868.3 Da PI: 5.373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G15389	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	322	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ro04_G15389 322 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 369 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MAKDNNSAAP SWNPSSFGME MQSNELNCAS QQLPNSYFNT NWDNSMDQSD PFESALSSIV 60 SSPAASNATA APAFVGAGEG GGDMIRELIG RLGSICNSGE ISSLSYNNST NNSCYSTPLN 120 SSPPTKLNLS MIDPQLRGKL PIPVPSSHPS LAPFSADPGF VERAARFSSF GNFGGLNGQF 180 NLNEAELAYR SMLKLDSGKL SRASSNQSLS KAAGSQMGVA QESIKSSSPQ DGNKKFSRFS 240 RSSTPENGEL GDSREGSSVV TEEQPNAKRS KTDEASGNEK ETQKSKTEQN GGSKATKDKS 300 EPVEPPKDYI HVRARRGQAT DSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE 360 IINYVQSLQR QVEFLSMKLA TVNPRMDLNM EALLSKEILQ SQGALQNALY QLDSAVPASF 420 PFGYQPQQLP PLHSNSISNE TETQFPVNLN AALTQNPNMQ SPAFDRFGEA NPQAPTFFED 480 DLQSMVQMGF GQIEQHNLHA FGFGCVIQLL LRAGSMASAQ MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MAKDNNSAAP SWNPSSFGME MQSNELNCAS QQLPNSYFNT NWDNSMDQSD PFESALSSIV  60
SSPAASNATA APAFVGAGEG GGDMIRELIG RLGSICNSGE ISSLSYNNST NNSCYSTPLN  120
SSPPTKLNLS MIDPQLRGKL PIPVPSSHPS LAPFSADPGF VERAARFSSF GNFGGLNGQF  180
NLNEAELAYR SMLKLDSGKL SRASSNQSLS KAAGSQMGVA QESIKSSSPQ DGNKKFSRFS  240
RSSTPENGEL GDSREGSSVV TEEQPNAKRS KTDEASGNEK ETQKSKTEQN GGSKATKDKS  300
EPVEPPKDYI HVRARRGQAT DSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE  360
IINYVQSLQR QVEFLSMKLA TVNPRMDLNM EALLSKEILQ SQGALQNALY QLDSAVPASF  420
PFGYQPQQLP PLHSNSISNE TETQFPVNLN AALTQNPNMQ SPAFDRFGEA NPQAPTFFED  480
DLQSMVQMGF GQIEQHNLHA FGFGCVIQLL LRAGSMASAQ MKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-69	bHLH family protein