PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G08854

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 346aa MW: 39327.5 Da PI: 9.9375

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G08854	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.1	2.1e-27	43	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r + g+ +++p+W++vs +++++g++r+p+qC+++w+nl+++ykki+e+e +r++e++s +++ ++l+ Ro04_G08854 43 RWTRQEILVLIKGKRAAESRGSGGRtprsdfgsgQAEPKWAAVSTYCKKHGVNRGPVQCRKRWSNLAGDYKKIREWEAQRKDETESFWVMRNDLR 137 8****************999765566677777***********************************************9999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
KQQNPWFSFP SKRRKRDRPP KRRLTTDLSH TGDDASKAPR LPRWTRQEIL VLIKGKRAAE 60 SRGSGGRTPR SDFGSGQAEP KWAAVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIREWEA 120 QRKDETESFW VMRNDLRRER KLPGFFDKEV YDIMEAVSGA PINLALPPPL MTMMESDNPK 180 EGLADEVEKL FDSRQGPTDD GLFSDYEQDE SGRSPDKEVR MKSPGSTTGI PAPLPISEKL 240 YKPIPQACQG QGAVGQKQPP SIPEMGSTSQ NRKRKRFAID GDEEPFSLQN QLIDVMEKNG 300 KMLADYFEAQ NSHLQLDREQ RKEHSDSLIA VLNKLADAFM RIADKL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

KQQNPWFSFP SKRRKRDRPP KRRLTTDLSH TGDDASKAPR LPRWTRQEIL VLIKGKRAAE  60
SRGSGGRTPR SDFGSGQAEP KWAAVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIREWEA  120
QRKDETESFW VMRNDLRRER KLPGFFDKEV YDIMEAVSGA PINLALPPPL MTMMESDNPK  180
EGLADEVEKL FDSRQGPTDD GLFSDYEQDE SGRSPDKEVR MKSPGSTTGI PAPLPISEKL  240
YKPIPQACQG QGAVGQKQPP SIPEMGSTSQ NRKRKRFAID GDEEPFSLQN QLIDVMEKNG  300
KMLADYFEAQ NSHLQLDREQ RKEHSDSLIA VLNKLADAFM RIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	RPPKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-103	Trihelix family protein