PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G08560

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 499aa MW: 55459 Da PI: 5.5572

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G08560	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	229	280	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A++++++L+ Ro04_G08560 229 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIDFVRELE 280 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MEKEENNNYS AAFMPPNFNG LDYTLDHHHD EDQQQQQQQL MNSTHVDHTS SSHENNNGMV 60 NYLMNNHHHD QLQLQHQHQQ PQQAPPPAGF CGGSTTSFDK LSFADVMQFA DFGPKLALNQ 120 TKISEEESGI DPVYFLKFPV LNEKLDDDDD QSLMVPRPEG PDKHQEERFT KSGEEEEARG 180 VSGSTNSVQL QFLGEDVQIN NPRGGLPELP KNKRKRPRST KTSQEVESQR MTHIAVERNR 240 RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIDFVRELE QLLQCLESQK RRRLLGEGPP 300 PPRQVGADSA AAANMAVLPS QPAHQGGGSV PFFPAANLPL NANDPIKFVD FESGLREETA 360 ENKSCFADVE VKVLGVDAMI KILSQRRPGQ LIKAIAALED LQLSILHTNI TTIEQTVLYS 420 FKVQVGSESR FTAEDIASSV QQIFSFIHAN TSSMSKSPGP ASCRGPYVDL SEMPLSFGGS 480 IRLHLDVAMF RGSLSVLDL

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MEKEENNNYS AAFMPPNFNG LDYTLDHHHD EDQQQQQQQL MNSTHVDHTS SSHENNNGMV  60
NYLMNNHHHD QLQLQHQHQQ PQQAPPPAGF CGGSTTSFDK LSFADVMQFA DFGPKLALNQ  120
TKISEEESGI DPVYFLKFPV LNEKLDDDDD QSLMVPRPEG PDKHQEERFT KSGEEEEARG  180
VSGSTNSVQL QFLGEDVQIN NPRGGLPELP KNKRKRPRST KTSQEVESQR MTHIAVERNR  240
RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIDFVRELE QLLQCLESQK RRRLLGEGPP  300
PPRQVGADSA AAANMAVLPS QPAHQGGGSV PFFPAANLPL NANDPIKFVD FESGLREETA  360
ENKSCFADVE VKVLGVDAMI KILSQRRPGQ LIKAIAALED LQLSILHTNI TTIEQTVLYS  420
FKVQVGSESR FTAEDIASSV QQIFSFIHAN TSSMSKSPGP ASCRGPYVDL SEMPLSFGGS  480
IRLHLDVAMF RGSLSVLDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	241	RMTHIAVERNRR
2	290	294	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-122	bHLH family protein