PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G07200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | Trihelix | ||||||||
Protein Properties | Length: 389aa MW: 44821.1 Da PI: 6.1665 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.2 | 3.9e-27 | 73 | 154 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf r+p++C++kw+nl k++kk k+++++ s +++y++++e Ro04_G07200 73 WVQDETRSLIAMRREMDGLFNTSKSNKHLWEQISAKMREKGFDRNPNMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 154 ********************************************************************84...556899***997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MYLSEKPHPI DFHKGEDVSE DMMIEVVSNE DLCQTHHPNH QPQQQQQILL LGDSSGSGED 60 HEAKPQKKRA ETWVQDETRS LIAMRREMDG LFNTSKSNKH LWEQISAKMR EKGFDRNPNM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILRER NKNAQYKSPT LPKVDSFMQF 180 SDKGIEDANI SFAHVEANAR PTLNLETGLD RDGHPLAITA ADAVAVNGVT PWNWRETPEN 240 GKSIKLKRGE NQSYGGRVIV VTWGDYTRRI GIDGSADAIK EAIKSAFRLR TKRAFWLEDE 300 DQIVRSLDRD MPLGNYTLHL DEGLAVKVCL YDEADNITVH TEDKVFFTED DYHEFLTRRG 360 WTCLREFDGY RNIENMDDLR PGAIYRGVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |