PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07141

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YC

Protein Properties

Length: 385aa MW: 43420.6 Da PI: 4.5373

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.8	9.9e-13	135	221	12	97
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97 ++++ + elP r+kki+k d d++++ +ea l+s + +lf+ l+ s a e+kr+ +k i +a +r + dflvd+ p Ro04_G07141 135 NEAEPIRLELPTGRVKKIMKLDRDINKVNSEALHLVSCSAQLFLQFLAEGSGEAAMEKKRKIVKLEHIRTAAKRHrATRDFLVDELP 221 555555779*********************************************************99988762688***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MSEEDATTVQ PPMAEENSVA TITPESGDEN PLGSASKEEN TAPIQLVPEE ENAEIVQPDR 60 EEEEDAASAQ LPMAEEDNAA TIRPESGEEN AVVTESEEEN TETIQLASEE ENAATIQSVS 120 ERKKAKPIQP ERKENEAEPI RLELPTGRVK KIMKLDRDIN KVNSEALHLV SCSAQLFLQF 180 LAEGSGEAAM EKKRKIVKLE HIRTAAKRHR ATRDFLVDEL PVPSQPSDQK STDRSRSRPV 240 ADNPAPAGTR RIDDFFRKPA TEAPIQIEDL LGLPERAWQI MEKMRNIKVQ YIDRKMLCYH 300 REVQTYYSSR NDFLYQYYCH QKLLLTCWII FWVRLPGSDT SADETDNKLR GTYSPYLLSS 360 ISSPAKLSGL LDLMITLVNP GDHEI

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MSEEDATTVQ PPMAEENSVA TITPESGDEN PLGSASKEEN TAPIQLVPEE ENAEIVQPDR  60
EEEEDAASAQ LPMAEEDNAA TIRPESGEEN AVVTESEEEN TETIQLASEE ENAATIQSVS  120
ERKKAKPIQP ERKENEAEPI RLELPTGRVK KIMKLDRDIN KVNSEALHLV SCSAQLFLQF  180
LAEGSGEAAM EKKRKIVKLE HIRTAAKRHR ATRDFLVDEL PVPSQPSDQK STDRSRSRPV  240
ADNPAPAGTR RIDDFFRKPA TEAPIQIEDL LGLPERAWQI MEKMRNIKVQ YIDRKMLCYH  300
REVQTYYSSR NDFLYQYYCH QKLLLTCWII FWVRLPGSDT SADETDNKLR GTYSPYLLSS  360
ISSPAKLSGL LDLMITLVNP GDHEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	4e-42	NF-YC family protein