PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02635

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

RAV

Protein Properties

Length: 376aa MW: 41652.8 Da PI: 8.645

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02635	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.4	8.2e-14	63	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Ro04_G02635 63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 111 89**9888.8*****3.....5******99***********98 PP
2	B3	100.4	1e-31	200	299	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ +++l++ Ro04_G02635 200 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTCKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDIVSFQRSTGPDKQLYI 297 89************************997777899************************************************87667777777 PP EE CS B3 95 kv 96 + Ro04_G02635 298 DW 299 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDIGASSTTD ESTASELSIS ISPPPPPPPS KPASLCRVGS GASSVILDSD NGIEAESRKL 60 PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAK AYDVAAQRFR GRDAVTNFKP 120 LAETTTAEND DDEIEAVFLN SHSKSEIVDM LRKHTYNDEL EQSKRNYGFD SNGKRRSRGE 180 SGPLGPFGSD RASKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS GSTCKGVLLN 240 FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DIVSFQRSTG PDKQLYIDWK 300 ARNGPNPVQA PVQMVRLFGV NIFKIPGGTG SAAAVVEAPI GCNHFVKGKE EEEGWPYMGY 360 VFMCSCKLQK VDLYIT

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDIGASSTTD ESTASELSIS ISPPPPPPPS KPASLCRVGS GASSVILDSD NGIEAESRKL  60
PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAK AYDVAAQRFR GRDAVTNFKP  120
LAETTTAEND DDEIEAVFLN SHSKSEIVDM LRKHTYNDEL EQSKRNYGFD SNGKRRSRGE  180
SGPLGPFGSD RASKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS GSTCKGVLLN  240
FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DIVSFQRSTG PDKQLYIDWK  300
ARNGPNPVQA PVQMVRLFGV NIFKIPGGTG SAAAVVEAPI GCNHFVKGKE EEEGWPYMGY  360
VFMCSCKLQK VDLYIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-142	RAV family protein