PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02630

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 464aa MW: 52108 Da PI: 4.7251

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02630	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.8	1.6e-30	57	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+Ptd+e++++ L+k +g+ +++ + i+++d ++ ++P++Lp +k++ + +fF+ + k+y+tg+rk+r+++ + +W++t Ro04_G02630 57 LPKGVKFDPTDQEIIWHLLAKTGAGDLrpHPFIDSfITDFDgdegVLCSHPKKLP-GIKQDGSVSHFFHVAIKAYNTGTRKRRKIHdddygDIRWHKT 153 799**********998888876665564443333777765666999***.777888899**************85545544667 PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++k+v+ +g + g+kk++v+y ++ k+ekt+Wvmh+y+l Ro04_G02630 154 GRTKPVIL-DGVQRGCKKIMVLYtsMAKGGKAEKTNWVMHQYHL 196 ****.99********4434666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MSGPSWLVDK KRIATKIRNA STSDPGRINW QSNPTRACPN CQYMIDNSDV AQEWPGLPKG 60 VKFDPTDQEI IWHLLAKTGA GDLRPHPFID SFITDFDGDE GVLCSHPKKL PGIKQDGSVS 120 HFFHVAIKAY NTGTRKRRKI HDDDYGDIRW HKTGRTKPVI LDGVQRGCKK IMVLYTSMAK 180 GGKAEKTNWV MHQYHLGTDE DEKDGEYVIS KIYYQQQQVK QADKTDQNSP ESIDPVIQAD 240 PVTPKSVIPE PLDPSFNLGE DTPAACTEPK SVTPEPPRPE RRHSDFGLGE ATPVASTDPF 300 LLIQLKHPDM DCVEDEVHPE YEKSGYHDQH SVENPNDEAI NSNVNNTQED PKWWDSESQY 360 LLDSQQLVEG LSLCDDLLQS QSPTRGGHEN GEPAQVKPRL ADYAKLGAED LKKDLEECQN 420 IVLDPANMEL ETPPDFRLSQ LEFESQESFI SWGGKVADLG VLRD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MSGPSWLVDK KRIATKIRNA STSDPGRINW QSNPTRACPN CQYMIDNSDV AQEWPGLPKG  60
VKFDPTDQEI IWHLLAKTGA GDLRPHPFID SFITDFDGDE GVLCSHPKKL PGIKQDGSVS  120
HFFHVAIKAY NTGTRKRRKI HDDDYGDIRW HKTGRTKPVI LDGVQRGCKK IMVLYTSMAK  180
GGKAEKTNWV MHQYHLGTDE DEKDGEYVIS KIYYQQQQVK QADKTDQNSP ESIDPVIQAD  240
PVTPKSVIPE PLDPSFNLGE DTPAACTEPK SVTPEPPRPE RRHSDFGLGE ATPVASTDPF  300
LLIQLKHPDM DCVEDEVHPE YEKSGYHDQH SVENPNDEAI NSNVNNTQED PKWWDSESQY  360
LLDSQQLVEG LSLCDDLLQS QSPTRGGHEN GEPAQVKPRL ADYAKLGAED LKKDLEECQN  420
IVLDPANMEL ETPPDFRLSQ LEFESQESFI SWGGKVADLG VLRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-165	NAC family protein