PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02551
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 339aa    MW: 37030.7 Da    PI: 6.2915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-154897255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+  E+rRR++iN++f+ Lr+l+P++     +K + a+ L +++eY+++Lq
  Ro04_G02551 48 RSKHSVTEQRRRSKINERFQILRDLIPHS----EQKRDTASFLLEVIEYVQYLQ 97
                 899*************************8....79******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MRSAAKGSQE EDEYEDDDFG SKKEGPSSNS SNPNSKDAKN NDKASAIRSK HSVTEQRRRS  60
KINERFQILR DLIPHSEQKR DTASFLLEVI EYVQYLQERV NKHEGSCQGW STEPTKLVPW  120
RNSHWRVQSF VGNPQAIKND TGVIAPFSGK FDDNNISIAP NILANSTQNP VESDPSRDVA  180
SKIMDQQPEI VNKGLPTPMP LPENLLPPVR SDGMLAHPLH GPISDAQSTQ CPTTSGAALN  240
QQEELTIEGG TISISSVYSQ GLLNSLSHAL QSAGVDLSQA NVSVQIDLGN RANRGLSAGT  300
PASKDHENPH SSNQTLAHFR DAGSGDDSDQ AHKRLKTRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-104bHLH family protein