PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02526

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 522aa MW: 58733.5 Da PI: 7.2995

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02526	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.6e-41	163	239	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ keyh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hn+rrrk+q Ro04_G02526 163 TCQVHGCNMDLSSSKEYHKRHRVCDAHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNQRRRKPQ 239 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MEPWSFGSEG KGFLLADEMD IPIDAFARST KSFLEWDNKT CFNFDKESVE SMEFMELGLP 60 DTVRVPFHGN QAVDILSGVG CNDSSNNTVA SPTCLITTSS SWGEGESGSK FSSPVFESIS 120 QDSSLIALKL GRLADSKDGQ NSQYLKERTK RARTNGPHYQ TPTCQVHGCN MDLSSSKEYH 180 KRHRVCDAHS KTATVIVNGI EQRFCQQCSR FHLLAEFDDV KRSCRRRLAG HNQRRRKPQL 240 DTFHCKSHKW LQSYQGTGYL GTSLPKRTPF VFSDILPGGI LYPEESNQYG HIKTEDESTY 300 SQCTTPMTNR QLLSNSFLHL YGRQQHASGI SSSGNEYSVY DTASHFQKAS GASTHRGALS 360 LLSAQSENFS MHSTRNEVAS PLQMQRTHHG VGQIYEKPST VALEKCGRNG SFPFRMNSMG 420 TDQMDSVMIS ESTQAVDFKL HTDRVFQEPA CFSNKYRLSP ENEPTFDLLQ LSSHFQRVEQ 480 ERNFFQLVGW RLFGFASSAG TFQLHWCISE AVDFLRPGNM MA

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MEPWSFGSEG KGFLLADEMD IPIDAFARST KSFLEWDNKT CFNFDKESVE SMEFMELGLP  60
DTVRVPFHGN QAVDILSGVG CNDSSNNTVA SPTCLITTSS SWGEGESGSK FSSPVFESIS  120
QDSSLIALKL GRLADSKDGQ NSQYLKERTK RARTNGPHYQ TPTCQVHGCN MDLSSSKEYH  180
KRHRVCDAHS KTATVIVNGI EQRFCQQCSR FHLLAEFDDV KRSCRRRLAG HNQRRRKPQL  240
DTFHCKSHKW LQSYQGTGYL GTSLPKRTPF VFSDILPGGI LYPEESNQYG HIKTEDESTY  300
SQCTTPMTNR QLLSNSFLHL YGRQQHASGI SSSGNEYSVY DTASHFQKAS GASTHRGALS  360
LLSAQSENFS MHSTRNEVAS PLQMQRTHHG VGQIYEKPST VALEKCGRNG SFPFRMNSMG  420
TDQMDSVMIS ESTQAVDFKL HTDRVFQEPA CFSNKYRLSP ENEPTFDLLQ LSSHFQRVEQ  480
ERNFFQLVGW RLFGFASSAG TFQLHWCISE AVDFLRPGNM MA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-51	SBP family protein