PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00429

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 468aa MW: 51612.8 Da PI: 8.306

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00429	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Ro04_G00429 64 YVCEICNQGFQRDQNLQMHRRRH 86 9*********************9 PP
2	zf-C2H2	16.6	2.3e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Ro04_G00429 142 WVCDKCSKAYAVQSDYKAHLKTC 164 58*******************98 PP
3	zf-C2H2	10.9	0.0015	172	190	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Ro04_G00429 172 DCGRVFSRVESFIEHQDTC 190 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MLANHNHTNT SAAPSSSSDH GFSTPLENGG AATNKRKRRP AGTPDPDAEV VSLSPKTLLE 60 SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKREIQDQ VKKRVFVCPE PSCLHHDPCH 120 ALGDLVGIKK HFRRKHSNHK QWVCDKCSKA YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV 180 ESFIEHQDTC SVRHVVRPEL QALQPAAACS SRTASSTSPS SDGHFSINNN APAPPPPLPG 240 LPVMPKPSDL PVVFISSDEG HDGIPSTSNH HQQQQQQQKE QVHMLELKLL PWSDTQTSPR 300 HEDEHYATHL KLSIGGSSSG GEQKNDSPRS CSREKNANAS VGVGPINWEV ARLKDFASEE 360 LKLAMAEKAY AEEARREAKR QIEMAELEFG NAKRIRQQAQ AELQKAQLLK EQSTKKISSA 420 IMQITCPSCK QHFHTSIAGG GGVGPSDDTT SLGISYMSSA TTEGEADQ

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MLANHNHTNT SAAPSSSSDH GFSTPLENGG AATNKRKRRP AGTPDPDAEV VSLSPKTLLE  60
SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKREIQDQ VKKRVFVCPE PSCLHHDPCH  120
ALGDLVGIKK HFRRKHSNHK QWVCDKCSKA YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC SVRHVVRPEL QALQPAAACS SRTASSTSPS SDGHFSINNN APAPPPPLPG  240
LPVMPKPSDL PVVFISSDEG HDGIPSTSNH HQQQQQQQKE QVHMLELKLL PWSDTQTSPR  300
HEDEHYATHL KLSIGGSSSG GEQKNDSPRS CSREKNANAS VGVGPINWEV ARLKDFASEE  360
LKLAMAEKAY AEEARREAKR QIEMAELEFG NAKRIRQQAQ AELQKAQLLK EQSTKKISSA  420
IMQITCPSCK QHFHTSIAGG GGVGPSDDTT SLGISYMSSA TTEGEADQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-114	C2H2 family protein