PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00427
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34470.7 Da    PI: 9.8065
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00427genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind330.93.6e-10112791300
    GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 
                  mddd+ +  n+gyye +  +k +lglqlm+s+ erd+k+    r++ ++ + + +++rd         m+  +r++++++        ++k+l+++++
  Ro04_G00427   1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPyiPGRDAPVMVSTNGYHPRDcvvqdapvpMSSYMRESWINQ--------RDKFLTMMPA 88 
                  999988889*****988..*******************9886666777889999*****999999999777799999999........7899999996 PP

    GAGA_bind  88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                  +         +++vl++t+ ++++ q     l++ + ++++ e   ++ iee + ++ke   +kkrq++  pk++k kk++k    +k++++++   +
  Ro04_G00427  89 NP--------NYGVLPETSAAQHSLQ----ILQP-PPDASRDE--RVNRIEE-PVVHKEGGPSKKRQNGGAPKTPKVKKPRK----PKDNSNPSV--P 164
                  55........499******9997666....3444.44534444..3444444.66778888888899999999999999999....444455555..7 PP

    GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                  r+k  kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+
  Ro04_G00427 165 RVKPAKKSLDVVINGITMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 262
                  9************************************************************************************************* PP

    GAGA_bind 284 DLkdhWAkHGtnkfvti 300
                  DL++hWA+HGtnkfvti
  Ro04_G00427 263 DLRTHWARHGTNKFVTI 279
                  ****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPYIP GRDAPVMVST NGYHPRDCVV  60
QDAPVPMSSY MRESWINQRD KFLTMMPANP NYGVLPETSA AQHSLQILQP PPDASRDERV  120
NRIEEPVVHK EGGPSKKRQN GGAPKTPKVK KPRKPKDNSN PSVPRVKPAK KSLDVVINGI  180
TMDISGIPIP VCSCTGAPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAR HGTNKFVTIS DLGRIESVDC KSLAYLCNIV  300
QMICGTRFKV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-106BBR-BPC family protein