PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00406
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 367aa    MW: 40742.8 Da    PI: 8.7047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00406genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10156203455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Ro04_G00406 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203
                  8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MDPPALVNEC AFSNANATSY NLSEIWQFPM NSGGASMGDP GLGLRRPSFA QFGDVSGAIR  60
DVLGGGDPNP MSLDHRARKR RDAEDDSPKS SGNIGANDCD GKRLKTAARC RDENLEAKAE  120
AETSSGKPAE HNTQPPDPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP  180
GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS MKLEAVNTRM TPAIEVFPAK EVSPYYMYTC  240
ESLLYVFGLV NKHSTLLQWH SVHNLQGNIA ADLHQSGCIC KLVVVLKEQH SPEKSSSIGN  300
KSIKAILPPS LAVKKSIPRY GKSKQDLILI FYIRHGVMML STTLLKLVTK HLHLFVCWEN  360
ELLPLYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.29e-76bHLH family protein