PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00316

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 517aa MW: 57843.1 Da PI: 7.4844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00316	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	334	379	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR ri+++ Lr l+Pk +K++ a+i A+eYIk+Lq Ro04_G00316 334 NLNAERKRRTRIKEGELALRALVPKI-----TKMDRASIPADAIEYIKELQ 379 5568*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
LSIPLNHSVK AVSTPAHLLS AGFRFPEEET TMAMSMGGLE RLMEEWLRPL VKAKQWDYCV 60 VWKLGHDPSR FIEMMGCCCG GGYGPCANVK DEEGAQLCRD GFLEHCIKTK ACEALSQLPD 120 SMPLYSGVHT EVVISDQPRW ISSHGNASDS NPSQSHDSNG TRVLIPVLLT GLIELFATKN 180 IPENQKMLDF FMDSFNVTLK QEAMTTHSRA NVNLNASASL DEFHTDPILD KYLQNRFSSP 240 NLPNFSPKPQ VVPSITQSTS CPSLEGSSSG SNPSTEHPPF DLSLPPHGSL KPLEKSSRFK 300 RPKCGDNLLK QQAVEKDNAK VMRRTGSETF RSKNLNAERK RRTRIKEGEL ALRALVPKIT 360 KMDRASIPAD AIEYIKELQK KVKELEEELR EIEEEDSANR VADLKVSALD KKKGGSNCLS 420 SADHKQNSYI RKGPMEVHVE VYQLSKRECL IKLFCGHNRG GFTRLMETMD CLGLEVVDAN 480 VTTFDRNALI ILRVEANEDI QAKKLREMLI KLTRETN

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

LSIPLNHSVK AVSTPAHLLS AGFRFPEEET TMAMSMGGLE RLMEEWLRPL VKAKQWDYCV  60
VWKLGHDPSR FIEMMGCCCG GGYGPCANVK DEEGAQLCRD GFLEHCIKTK ACEALSQLPD  120
SMPLYSGVHT EVVISDQPRW ISSHGNASDS NPSQSHDSNG TRVLIPVLLT GLIELFATKN  180
IPENQKMLDF FMDSFNVTLK QEAMTTHSRA NVNLNASASL DEFHTDPILD KYLQNRFSSP  240
NLPNFSPKPQ VVPSITQSTS CPSLEGSSSG SNPSTEHPPF DLSLPPHGSL KPLEKSSRFK  300
RPKCGDNLLK QQAVEKDNAK VMRRTGSETF RSKNLNAERK RRTRIKEGEL ALRALVPKIT  360
KMDRASIPAD AIEYIKELQK KVKELEEELR EIEEEDSANR VADLKVSALD KKKGGSNCLS  420
SADHKQNSYI RKGPMEVHVE VYQLSKRECL IKLFCGHNRG GFTRLMETMD CLGLEVVDAN  480
VTTFDRNALI ILRVEANEDI QAKKLREMLI KLTRETN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-40	bHLH family protein