PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00243
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 616aa    MW: 69321.3 Da    PI: 4.3962
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00243genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.4e-321091992101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k ye+++dee +++isw+++++sfv+ d ++f+  +LpkyFkhsnf+SF+RQLn+YgF+k++ ++           F+++ F +g+k+ll++i 
   Ro04_G00243 109 FLRKCYEMVDDEEADSIISWTDTNDSFVIRDVTQFSVLMLPKYFKHSNFSSFMRQLNIYGFRKIDPDH---------YVFANEGFIRGQKHLLKNIF 196
                   9*****************************************************************99.........67*****************9 PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Ro04_G00243 197 RRK 199
                   997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    
MGAEEDDLQD DLKHRLRLEN TNFVTISPIF KGVVQKCAEE DNLALSEIFS TPLSLLDPTK  60
TPKSNLQSQF QNLGPSSKTQ NPTDMVRKSK EKEKTGDGSG STDGSVPPFL RKCYEMVDDE  120
EADSIISWTD TNDSFVIRDV TQFSVLMLPK YFKHSNFSSF MRQLNIYGFR KIDPDHYVFA  180
NEGFIRGQKH LLKNIFRRKY PQGTDQRKVL QQKDNPDEPC EDMENGLWRE VENLKIDKIS  240
LKQELVKLRQ HQEMSENNLL LLRDRLHGME KDQQQMLSFL VMAMQNPGFL VQLLQPKENN  300
WRMAEAGNML EEVDDGRPVA ANCAIVRYQP PMDEAPKPIL TPHSGSEKQP ELDSFVNSDG  360
VIVRYQPPVD EAPDPIFTPN SVSEKQPEFD SYPDGVGDSF MNSDGVIVRY RSPMDAATSP  420
VLAQNSGSGK QPEFDSYPDG MKDFFVNSDF MKMLMDDKLS PRENHAPFIL PDADVDDNAW  480
EKLLLTSYLL ENIEGTKEER KEPDDSRMEV ESTAAELDES ENFDSLLEQM KTSVYGSNME  540
NSQNLEPSGQ LGLVASDPNN RQETLSGNHS GGAFSWMDSF CHAKGSGGCN GSDEGSLKGA  600
LEGFATSEVS LSIPKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-83HSF family protein