PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G00211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | YABBY | ||||||||
Protein Properties | Length: 233aa MW: 26652.1 Da PI: 6.5026 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.2 | 8.8e-66 | 6 | 179 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshlde..slkeelleelkveeenlksnvekeesas 93 ++f+ +eq+CyvqC+fC til+vsvP +sl+++vtvrCGhC+ llsvnl+kas +ll++ + d+ + k+e + ++ve++ +++ + ++ + Ro04_G00211 6 HLFDLPEQICYVQCGFCATILLVSVPCSSLSMLVTVRCGHCSCLLSVNLMKASflpfHLLTSLGQDDQglQQKDEEVCAEEVEKQRYQMLDDMRGPYM 103 7899***********************************************99999988998776333113333444455666677777777777666 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +++ +e+ ++ ++ + v++PPekrqr+Psaynrfikeeiqr+ka nP ++h+eafs+aaknWa fP++ ++ Ro04_G00211 104 VVSTNSDNEEEYTNTITMNHIVNKPPEKRQRAPSAYNRFIKEEIQRLKAVNPRMTHKEAFSTAAKNWAQFPPVQYK 179 666665556666666666667***************************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSTPNHLFDL PEQICYVQCG FCATILLVSV PCSSLSMLVT VRCGHCSCLL SVNLMKASFL 60 PFHLLTSLGQ DDQGLQQKDE EVCAEEVEKQ RYQMLDDMRG PYMVVSTNSD NEEEYTNTIT 120 MNHIVNKPPE KRQRAPSAYN RFIKEEIQRL KAVNPRMTHK EAFSTAAKNW AQFPPVQYKI 180 DGPDHGESSS QLNREDQKVA WDSGVNHQVQ EDSKEFRGRK APRHSIWART PFE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-75 | YABBY family protein |