PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00187

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 344aa MW: 38938.4 Da PI: 7.6592

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00187	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	96	157	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+++t+eql +Leel+++ ++p+a+++++ ++ l +++ ++V++WFqN+Ra+e++ Ro04_G00187 96 RSSRWNPTPEQLLALEELYRRgIKTPTAQQIRQVTALLrhfgKIEGKNVFYWFQNHRARERQ 157 689***************99************************************97 PP
2	Wus_type_Homeobox	107.4	8.9e-35	97	159	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+ Leely++G++tP++++i+++ta L+++Gkie+kNVfyWFQN++aRerqk+ Ro04_G00187 97 SSRWNPTPEQLLALEELYRRGIKTPTAQQIRQVTALLRHFGKIEGKNVFYWFQNHRARERQKR 159 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MWMMTGCRSG GCGEPNINNR DIHDYSIKAA NLQPAVVLTP KLSATSNITQ NSVLPFNHHH 60 HHHQVIPVTP SEQGRSGSDY FYNDQQPVAA AVAPPRSSRW NPTPEQLLAL EELYRRGIKT 120 PTAQQIRQVT ALLRHFGKIE GKNVFYWFQN HRARERQKRR RELMSSMSQS HSKEQRQQSW 180 TNSLISSIQN KESAGGLKNL SLEGEQQSKW TLSNCISDQE SSSVLQERMS MVESNSSKQP 240 VDQSYSATQI SQPPCANPTV TLIDTKPLDY HHYYDYDYGM VLTAPHICKG EETRETRTLE 300 LFPLESDNLK GVKDSTLPQT KKDTTADFVA DQYFHSICKD GSDG

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MWMMTGCRSG GCGEPNINNR DIHDYSIKAA NLQPAVVLTP KLSATSNITQ NSVLPFNHHH  60
HHHQVIPVTP SEQGRSGSDY FYNDQQPVAA AVAPPRSSRW NPTPEQLLAL EELYRRGIKT  120
PTAQQIRQVT ALLRHFGKIE GKNVFYWFQN HRARERQKRR RELMSSMSQS HSKEQRQQSW  180
TNSLISSIQN KESAGGLKNL SLEGEQQSKW TLSNCISDQE SSSVLQERMS MVESNSSKQP  240
VDQSYSATQI SQPPCANPTV TLIDTKPLDY HHYYDYDYGM VLTAPHICKG EETRETRTLE  300
LFPLESDNLK GVKDSTLPQT KKDTTADFVA DQYFHSICKD GSDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-24	WOX family protein