PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00128

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 335aa MW: 37501.5 Da PI: 4.41

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00128	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.8e-19	87	140	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa+ k Ro04_G00128 87 KKRRLTVDQVQFLEKNFELENKLEPDRKGQLAKELGLEPRQVAIWFQNRRARFK 140 56689***********************************************98 PP
2	HD-ZIP_I/II	124.9	3.7e-40	87	178	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv++LE++Fe e+kLep+rK +la+eLgl+prqva+WFqnrRAR+ktkqlEkdy++L++++++lk ++++L k++ +L++e+++ Ro04_G00128 87 KKRRLTVDQVQFLEKNFELENKLEPDRKGQLAKELGLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASFEKLKGDHDNLLKQNGNLKNEIDS 178 9**************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MVGGKRCGAS SEMNAIFHNE RLPCSSDVLE SLWIPTSSSS FHGSNSMVNF KNANGGDSME 60 KPFFQPIDKE ENGDDDYDGS LLQQPGKKRR LTVDQVQFLE KNFELENKLE PDRKGQLAKE 120 LGLEPRQVAI WFQNRRARFK TKQLEKDYDS LRASFEKLKG DHDNLLKQNG NLKNEIDSLK 180 DMLLSREKGK GNLESNDGIN SPNIDPPQSG IPNNASDDYV PIMVFKQEDA SSAKSDVFDS 240 DSPRCTENHS FLLEPTTTAD SSHGFEPADN SDFSQDDEDD NSLSKSLLPL PLPLPLPPPC 300 LLKLEDICYD DPPAISSNFG LIPVEDQHPF GFWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARFKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27045.1	3e-33	HD-ZIP family protein