PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00070
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 336aa    MW: 36278.4 Da    PI: 9.1101
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00070genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1032e-3265122258
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  ++v+Y+eClkNhAas+Ggha+DGCgEf p++ ++ +++a+lkCaACgCHRnFHRr+ +
  Ro04_G00070  65 TAVVYRECLKNHAASIGGHALDGCGEFFPNPISDpADPASLKCAACGCHRNFHRRDAA 122
                  5799***************************9999********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDFKTTTTTP TAAAAAATAT INTPDTDTEL PTSDSKSGFR SLSFTNGALK PHHYSTVPLP  60
PPPQTAVVYR ECLKNHAASI GGHALDGCGE FFPNPISDPA DPASLKCAAC GCHRNFHRRD  120
AADARAFTPP KAILVSPHQR LLPAPPAPHS SSPSPSRSTS PGPSTTLSPH SPPPVSHLPP  180
SFFGTPSQML LALSSAAFPA PSDERVQGPT NENPTARRKR SRTKFSQEQK DKMFRFADKL  240
GWRMQKSEDK FVQDFCDEVG IGRRVFKVWM HNNKHHLKKR LLSSAGLINC NDGGDGGVAS  300
FDSKEDDDNN VINPRSEAGS RDQRFYFSNN GSSSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.16e-26ZF-HD family protein