PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00056

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 456aa MW: 49342.6 Da PI: 8.1112

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00056	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	87	147	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk++s Ro04_G00056 87 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNAS 147 7899******************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MGRSELKIET LVLETMSGKE LTADKQEDNP PDQSTEDLKR PTTSSGISEN PKTPSADRET 60 SVSLKSSKNG EQSDETSSSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN 120 CQRYWTAGGI MRNVPVGAGR RKNKNASSAS HYRHMLMSDA LQTARASAAA SNGGHTPTLG 180 RNGTVLTFGS DSPLCESMAS VLSLAEKTQN CVQNGVPVPD QQRILAASVA GDNGDDQSSG 240 SSNVTASNSS ERGGKAGLQE PAVYNCQGFP PHQVPCFPGA PWQYQWNSPQ WTSAMPPPAF 300 FHSGFPISFY PAPPYWGCTA PGSWNVPCNS PPSSTLSYCG TSSGPNSPTL GKHSRDGDIL 360 NQASSLKEEP SRENRSDRCV LIPKTLRIDD PSEAAKSSIW ETLGIKNEKG NSINEGGIFK 420 SFQSKGDEKR PVVETSSVLQ ANPAAFSRSL NFRERT

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MGRSELKIET LVLETMSGKE LTADKQEDNP PDQSTEDLKR PTTSSGISEN PKTPSADRET  60
SVSLKSSKNG EQSDETSSSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN  120
CQRYWTAGGI MRNVPVGAGR RKNKNASSAS HYRHMLMSDA LQTARASAAA SNGGHTPTLG  180
RNGTVLTFGS DSPLCESMAS VLSLAEKTQN CVQNGVPVPD QQRILAASVA GDNGDDQSSG  240
SSNVTASNSS ERGGKAGLQE PAVYNCQGFP PHQVPCFPGA PWQYQWNSPQ WTSAMPPPAF  300
FHSGFPISFY PAPPYWGCTA PGSWNVPCNS PPSSTLSYCG TSSGPNSPTL GKHSRDGDIL  360
NQASSLKEEP SRENRSDRCV LIPKTLRIDD PSEAAKSSIW ETLGIKNEKG NSINEGGIFK  420
SFQSKGDEKR PVVETSSVLQ ANPAAFSRSL NFRERT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	2e-96	Dof family protein