PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00054

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 414aa MW: 45856.5 Da PI: 7.4405

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00054	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	151	196	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Ro04_G00054 151 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 196 899***************************.*********996 PP
2	Myb_DNA-binding	55.6	1.2e-17	203	246	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Ro04_G00054 203 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 246 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MKGLMANYNG SSTSTASAIY AIENPNALTC FSSSSSSSSP GFSMGMVYAD MGSLSLSASN 60 YGLVPSVSSL ESSYYISNSN LSHHEAENGT PFWGLPLSLG TRSAEEHHGH NNNSDFRGGG 120 KAGSDSMSDD GTEEHNESLN HKNGQSKLCA RGHWRPAEDS KLKELVALYG PQNWNLIAEK 180 LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMQAHRI YGNKWAMIAR LFPGRTDNAV 240 KNHWHVIMAR KYREQSSAYR RRKLSQSVYR ASSMEENINS SFNVRTEPPP VPYSYLNYGS 300 SGNSQNMASW EEALITSKKV PPFQFLPGTK SNEVRSWESS SDEAAQISSG FYDHPPYSRM 360 NMMAMQQSNY YHTLQSYSDS ASAGGKPSSS TADAGQDRRD LAPPFIDFLG VGAT

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MKGLMANYNG SSTSTASAIY AIENPNALTC FSSSSSSSSP GFSMGMVYAD MGSLSLSASN  60
YGLVPSVSSL ESSYYISNSN LSHHEAENGT PFWGLPLSLG TRSAEEHHGH NNNSDFRGGG  120
KAGSDSMSDD GTEEHNESLN HKNGQSKLCA RGHWRPAEDS KLKELVALYG PQNWNLIAEK  180
LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMQAHRI YGNKWAMIAR LFPGRTDNAV  240
KNHWHVIMAR KYREQSSAYR RRKLSQSVYR ASSMEENINS SFNVRTEPPP VPYSYLNYGS  300
SGNSQNMASW EEALITSKKV PPFQFLPGTK SNEVRSWESS SDEAAQISSG FYDHPPYSRM  360
NMMAMQQSNY YHTLQSYSDS ASAGGKPSSS TADAGQDRRD LAPPFIDFLG VGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-76	MYB family protein