PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00052

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 413aa MW: 47196.6 Da PI: 8.0709

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00052	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.9	4.1e-21	53	97	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk Ro04_G00052 53 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 97 689****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEASENEYWG HGQELKELFG WFGNFRRSRF SRVYRFLWPP GRVMMGRVKL KIKRLENTNG 60 RQATYAKRKH GIMKKANELS ILCDIDIVLL MFSPTGKPSL CSGKRSSIEE VIAKFAQLTP 120 QERAKRKLES LEALKKTFKK LDHDVNIQEF LGTSSQTVED LSNQSRLLQS QLSEIKKRLS 180 CWTNPDKISS VEQLGQMEDS LRESLNQIRT HKENLQKQQL MSLECTSQFQ NGLHIPFSMS 240 SEQQLQPLPW IPTNESRHIV LPEDPNLLPH RDMECSASSS FGSYSGYLGT GKSSEISNSG 300 QENGILNDLS RTAPLRLQLG GQFSSYLPYN LNMLTDTKFQ QPAEMSPQEN PVEYHVNGSF 360 EAPRPDFFAT QHSWASTSGP CAVTMFDEHL YSQVSLSRIL DFSIVFYCFV LVW

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEASENEYWG HGQELKELFG WFGNFRRSRF SRVYRFLWPP GRVMMGRVKL KIKRLENTNG  60
RQATYAKRKH GIMKKANELS ILCDIDIVLL MFSPTGKPSL CSGKRSSIEE VIAKFAQLTP  120
QERAKRKLES LEALKKTFKK LDHDVNIQEF LGTSSQTVED LSNQSRLLQS QLSEIKKRLS  180
CWTNPDKISS VEQLGQMEDS LRESLNQIRT HKENLQKQQL MSLECTSQFQ NGLHIPFSMS  240
SEQQLQPLPW IPTNESRHIV LPEDPNLLPH RDMECSASSS FGSYSGYLGT GKSSEISNSG  300
QENGILNDLS RTAPLRLQLG GQFSSYLPYN LNMLTDTKFQ QPAEMSPQEN PVEYHVNGSF  360
EAPRPDFFAT QHSWASTSGP CAVTMFDEHL YSQVSLSRIL DFSIVFYCFV LVW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-105	M-type_MADS family protein