PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G00011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 592aa MW: 65356.8 Da PI: 8.228 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.4 | 7e-34 | 311 | 367 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+geHnh+ Ro04_G00011 311 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGEHNHQ 367 8****************************************.***************8 PP | |||||||
2 | WRKY | 107.2 | 8.3e-34 | 478 | 536 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Ro04_G00011 478 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHNHD 536 59********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence |
MEAVSHQHQH TTSISIQRRS SESEKKNRGQ KQKPSQKNRK ELFRLSLSGV DFLLNFRSTE 60 PKTKQCVWFG FETASLVCCW FGFDQMAESE QQEEPPPPST SSAPSAPSRP TITLPPRTSF 120 ETLFNTSGSG TTGQGLGFSP GPMTLVSSFF SDGEDCKSFS QLLAGAMLSP AGFPQLEDRN 180 SGDDSSEFRF KQNEPAGQSI GPPSPMFPAG FLDSPGLFSP GQGAFGMTHQ QALAQVTAQA 240 SHSQSYTFHI PNEHTTTSMT QLPVFTSSTT APKEITSGIP DSGVTRKESS DISHADQRSQ 300 PSSLTVDKPN DDGYNWRKYG QKQVKGSEFP RSYYKCTHPS CPVKKKVERS VDGQITEIIY 360 KGEHNHQRPQ SKRPKDSRNQ NGNVQVNHDL ASQVHGGSSK EGTYSTSKQG QESSQAISGT 420 SDSEEVGDAE TKVEERDEDE PDAKRRNTEV RHSEPASSHR TVTEPRIIVQ TTSEVDLLDD 480 GYRWRKYGQK VVKGNPYPRS YYKCTFQGCN VRKHVERAAT DPKAVITTYE GKHNHDVPAS 540 KTGSHYTANN NASNIRSGNP GTGKHASVSR MDPRNNDQQP IARLRLKEEQ IT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-167 | WRKY family protein |